MolNFT v1 · #160581 · protein

Crystal structure of the N-terminal domain of fibronectin- binding protein pava from streptococcus pneumoniae

6PON · Adherence and virulence protein a: “Crystal structure of the N-terminal domain of fibronectin- binding protein pava from streptococcus pneumoniae”. X-ray diffraction, 5 pockets (best druggability 0.47). MolNFT v1 #160581 on…

PDB: 6PON
Type: protein
Length: 520 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Adherence and virulence protein a
UniProt: Q9RNF3
Pockets: 5 · best druggability 0.47

Structure

x-ray diffraction · 2 distinct chains · 29% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Adherence and virulence protein a	protein	255	29% helix, 30% strand	Q9RNF3
B	Adherence and virulence protein a	protein	265	29% helix, 28% strand	Q9RNF3

Pockets

5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	201	0.47	0.75	24	empty
2	74	0.36	0.75	16	empty
3	63	0.35	0.76	12	empty
4	74	0.34	0.75	14	empty
5	62	0.29	0.74	14	empty

Interfaces

1 interface between chains.

A–B · 716 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

6PON · Crystal structure of the N-terminal domain of fibronectin- binding protein pava from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9RNF3
Elsewhere: RCSB PDB 6PON · PDBe 6PON · UniProt Q9RNF3

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