MolNFT v1 · #160580 · RNA

Cryo-EM structure of the full-length bacillus subtilis glyqs T-box riboswitch in complex with tRNA-gly

6POM · T-box glyqs leader (155-mer): “Cryo-EM structure of the full-length bacillus subtilis glyqs T-box riboswitch in complex with tRNA-gly”. Electron microscopy, 12 pockets (best druggability 0.65). MolNFT v1 #160580 on GenesisL1: 3D…

PDB: 6POM
Type: RNA
Length: 230 nucleotides
Chains: 2
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: T-box glyqs leader (155-mer); Trnagly (75-mer)
Pockets: 12 · best druggability 0.65

Structure

electron microscopy · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	T-box glyqs leader (155-mer)	rna	155	—	—
B	Trnagly (75-mer)	rna	75	—	—

Pockets

12 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	726	0.65	0.75	33	empty
2	767	0.64	0.74	42	empty
3	446	0.63	0.78	23	empty
4	600	0.63	0.76	37	empty
5	520	0.63	0.76	28	empty

Interfaces

1 interface between chains.

A–B · 1136 Å² buried · 48 hydrogen bonds · nucleic-nucleic

Compared structures

6POM · Cryo-EM structure of the full-length Bacillus subtilis glyQS T-box riboswitch in complex… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6POM · PDBe 6POM

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