MolNFT v1 · #160571 · protein
Clpx-clpp complex bound to substrate and ATP-gamma-S, class 2
6POD: “Clpx-clpp complex bound to substrate and ATP-gamma-S, class 2”. Electron microscopy, 2 ligands (AGS, ADP). MolNFT v1 #160571 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6POD
- Type
- protein
- Length
- 3,446 residues
- Chains
- 14
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A1Q9L861, S1IIE7
- Ligands
- AGS, ADP
Structure
electron microscopy · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 329 | — | A0A1Q9L861 |
| B | — | protein | 350 | — | A0A1Q9L861 |
| C, E | — | protein | 351 | — | A0A1Q9L861 |
| D | — | protein | 352 | — | A0A1Q9L861 |
| F | — | protein | 350 | — | A0A1Q9L861 |
| H, I, J, K, L, M, N | — | protein | 192 | — | S1IIE7 |
| S | — | protein | 19 | — | — |
Ligands and binding sites
- AGS · Phosphothiophosphoric acid-adenylate ester · ligand · 5 copies · chains B, C, D, E, F
- ADP · Adenosine-5'-diphosphate · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6POD · ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1Q9L861
- Every structure of UniProt S1IIE7
- Elsewhere: RCSB PDB 6POD · PDBe 6POD · UniProt A0A1Q9L861 · UniProt S1IIE7
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