MolNFT v1 · #16055 · protein
Hypothetical protein from pyrococcus furiosus pfu-1801964
1NNH · Asparaginyl-tRNA synthetase-related peptide: “Hypothetical protein from pyrococcus furiosus pfu-1801964”. X-ray diffraction, 1 ligand (NA), 3 pockets (best druggability 0.79). MolNFT v1 #16055 on GenesisL1: 3D structure, binding…
- PDB
- 1NNH
- Type
- protein
- Length
- 293 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Asparaginyl-tRNA synthetase-related peptide
- UniProt
- Q8TZN6
- Ligands
- NA
- Pockets
- 3 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Asparaginyl-tRNA synthetase-related peptide | protein | 293 | 37% helix, 23% strand | Q8TZN6 |
Ligands and binding sites
- NA · Sodium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 356 | 0.79 | 0.89 | 55 | empty |
| 2 | 77 | 0.40 | 0.79 | 16 | empty |
| 3 | 81 | 0.33 | 0.74 | 15 | empty |
Compared structures
- 1NNH · Hypothetical protein from Pyrococcus furiosus Pfu-1801964 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8TZN6
- Elsewhere: RCSB PDB 1NNH · PDBe 1NNH · UniProt Q8TZN6
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