MolNFT v1 · #160427 · protein

Adenylate kinase from methanococcus igneus - apo form

6PK5: “Adenylate kinase from methanococcus igneus - apo form”. X-ray diffraction, 1 ligand (CL). MolNFT v1 #160427 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6PK5
Type: protein
Length: 1,137 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P43408
Ligands: CL

Structure

x-ray diffraction · 6 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	188	—	P43408
B	—	protein	189	—	P43408
C	—	protein	190	—	P43408
D	—	protein	191	—	P43408
E	—	protein	189	—	P43408
F	—	protein	190	—	P43408

Ligands and binding sites

CL · Chloride ion · ion · 15 copies · chains A, B, C, D, E, F

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6PK5 · Adenylate kinase from Methanococcus igneus - apo form · the same entry in another collection · chain F against F, TM-score 1.00
P43408 · AlphaFold monomer V2.0 prediction for adenylate kinase (P43408) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P43408
Elsewhere: RCSB PDB 6PK5 · PDBe 6PK5 · UniProt P43408

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