MolNFT v1 · #160425 · protein
Alanine-glyoxylate aminotransferase 1 (AGT1) from arabidopsis thaliana
6PK3: “Alanine-glyoxylate aminotransferase 1 (AGT1) from arabidopsis thaliana”. X-ray diffraction, 2 ligands (PLP, CL). MolNFT v1 #160425 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6PK3
- Type
- protein
- Length
- 799 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q56YA5
- Ligands
- PLP, CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 399 | — | Q56YA5 |
| B | — | protein | 400 | — | Q56YA5 |
Ligands and binding sites
- PLP · Pyridoxal-5'-phosphate · ligand · 2 copies · chains A, B
- CL · Chloride ion · ion · chains B
- FMT · Formic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6PK3 · Alanine-glyoxylate aminotransferase 1 (AGT1) from Arabidopsis thaliana · the same entry in another collection · chain A against A, TM-score 1.00
- Q56YA5 · AlphaFold monomer V2.0 prediction for serine--glyoxylate aminotransferase (Q56YA5) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q56YA5
- Elsewhere: RCSB PDB 6PK3 · PDBe 6PK3 · UniProt Q56YA5
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