MolNFT v1 · #160306 · protein
Structure of kluyveromyces marxianus USB1 with uridine monophosphate
6PGL: “Structure of kluyveromyces marxianus USB1 with uridine monophosphate”. X-ray diffraction, 1 ligand (U5P). MolNFT v1 #160306 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6PGL
- Type
- protein
- Length
- 642 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- W0TCJ5
- Ligands
- U5P
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 218 | — | W0TCJ5 |
| B | — | protein | 214 | — | W0TCJ5 |
| C | — | protein | 210 | — | W0TCJ5 |
Ligands and binding sites
- U5P · Uridine-5'-monophosphate · ligand · 3 copies · chains A, B, C
- EDO · 1,2-ethanediol · additive · 6 copies · chains B, C
- PGE · Triethylene glycol · additive · 5 copies · chains A, B, C
- GOL · Glycerol · additive · 2 copies · chains A, C
- PG6 · 1-(2-methoxy-ethoxy)-2-{2-[2-(2-methoxy-ethoxy]-ethoxy}-ethane · additive · 2 copies · chains B, A, C
- PG4 · Tetraethylene glycol · additive · chains C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6PGL · Structure of Kluyveromyces marxianus Usb1 with uridine monophosphate · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt W0TCJ5
- Elsewhere: RCSB PDB 6PGL · PDBe 6PGL · UniProt W0TCJ5
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