MolNFT v1 · #160282 · protein
Structure of S. venezuelae risg-whig-C-di-gmp complex: orthorhombic crystal form
6PFV: “Structure of S. venezuelae risg-whig-C-di-gmp complex: orthorhombic crystal form”. X-ray diffraction, 1 ligand (C2E). MolNFT v1 #160282 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6PFV
- Type
- protein
- Length
- 1,146 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- F2RFR7, A0A3N1Q704
- Ligands
- C2E
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| T | — | protein | 164 | — | F2RFR7 |
| A, D | — | protein | 220 | — | A0A3N1Q704 |
| B | — | protein | 160 | — | F2RFR7 |
| E | — | protein | 159 | — | F2RFR7 |
| G | — | protein | 223 | — | A0A3N1Q704 |
Ligands and binding sites
- C2E · 9,9'-[(2r,3r,3as,5s,7ar,9r,10r,10as,12s,14ar)-3,5,10, 12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3, 2-D:3',2'-J][1,3,7,9,2, 8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) · ligand · 6 copies · chains T, A, B, D, E, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6PFV · Structure of S. venezuelae RisG-WhiG-c-di-GMP complex: orthorhombic crystal form · the same entry in another collection · chain T against T, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F2RFR7
- Every structure of UniProt A0A3N1Q704
- Elsewhere: RCSB PDB 6PFV · PDBe 6PFV · UniProt F2RFR7 · UniProt A0A3N1Q704
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