MolNFT v1 · #160281 · protein
RSEGFP2 with a chlorinated chromophore in the non-fluorescent off- state in a contracted unit cell
6PFU · Green fluorescent protein: “RSEGFP2 with a chlorinated chromophore in the non-fluorescent off- state in a contracted unit cell”. X-ray diffraction, 2 ligands (OHD, SO4), 1 pocket (best druggability 0.76). MolNFT v1 #160281 on…
- PDB
- 6PFU
- Type
- protein
- Length
- 228 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Green fluorescent protein
- Ligands
- OHD, SO4
- Pockets
- 1 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 13% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Green fluorescent protein | protein | 228 | 13% helix, 52% strand | — |
Ligands and binding sites
- OHD · {(4Z)-2-[(1S)-1-aminoethyl]-4-[(3-chloro-4-hydroxyphenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid · ligand · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 93 | 0.76 | 0.97 | 25 | OHD |
Modifications
Observed in the structure: 2 covalent (covalent ligand).
Compared structures
- 6PFU · rsEGFP2 with a chlorinated chromophore in the non-fluorescent off-state in a contracted… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6PFU · PDBe 6PFU
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