MolNFT v1 · #160237 · protein

Structure of spastin hexamer (subunit a-E) in complex with substrate peptide

6PEK: “Structure of spastin hexamer (subunit a-E) in complex with substrate peptide”. Electron microscopy, 3 ligands (ADP, BEF, MG). MolNFT v1 #160237 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6PEK
Type: protein
Length: 1,405 residues
Chains: 6
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q9UBP0
Ligands: ADP, BEF, MG

Structure

electron microscopy · 5 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	283	—	Q9UBP0
B, C	—	protein	288	—	Q9UBP0
D	—	protein	293	—	Q9UBP0
E	—	protein	243	—	Q9UBP0
G	—	protein	10	—	—

Ligands and binding sites

ADP · Adenosine-5'-diphosphate · ligand · 5 copies · chains A, B, C, D, E
BEF · Beryllium trifluoride ion · ligand · 4 copies · chains A, B, C, D, E
MG · Magnesium ion · metal · 4 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6PEK · Structure of Spastin Hexamer (Subunit A-E) in complex with substrate peptide · the same entry in another collection · chain G against G, TM-score 1.00
Q9UBP0 · AlphaFold monomer V2.0 prediction for spastin (Q9UBP0) · a predicted model of the same protein · chain E against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9UBP0
Elsewhere: RCSB PDB 6PEK · PDBe 6PEK · UniProt Q9UBP0

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