MolNFT v1 · #160217 · protein
Crystal structure of ppargamma ligand binding domain in complex with smrt peptide and inverse agonist T0070907
6PDZ: “Crystal structure of ppargamma ligand binding domain in complex with smrt peptide and inverse agonist T0070907”. X-ray diffraction, 1 ligand (EEY). MolNFT v1 #160217 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6PDZ
- Type
- protein
- Length
- 543 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P37231, Q9Y618
- Ligands
- EEY
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 262 | — | P37231 |
| C | — | protein | 13 | — | Q9Y618 |
| A | — | protein | 256 | — | P37231 |
| D | — | protein | 12 | — | Q9Y618 |
Ligands and binding sites
- EEY · 2-chloro-5-nitro-N-(pyridin-4-yl)benzamide · ligand · 2 copies · chains B, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6PDZ · Crystal structure of PPARgamma ligand binding domain in complex with SMRT peptide and… · the same entry in another collection · chain B against B, TM-score 1.00
- Q9Y618 · AlphaFold monomer V2.0 prediction for nuclear receptor corepressor 2 (Q9Y618) · a predicted model of the same protein · chain D against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P37231
- Every structure of UniProt Q9Y618
- Elsewhere: RCSB PDB 6PDZ · PDBe 6PDZ · UniProt P37231 · UniProt Q9Y618
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