GL1X · GenesisL1 explorer

MolNFT v1 · #160138 · protein

Pseudopaline dehydrogenase with (S)-pseudopaline soaked 1 hour

6PBP: “Pseudopaline dehydrogenase with (S)-pseudopaline soaked 1 hour”. X-ray diffraction, 2 ligands (NAP, O7J). MolNFT v1 #160138 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6PBP
Type
protein
Length
850 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
Q9HUX5
Ligands
NAP, O7J

Structure

x-ray diffraction · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, B—protein425—Q9HUX5

Ligands and binding sites

  • NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · 2 copies · chains A, B
  • O7J · N-[(1S)-1-carboxy-3-{[(1S)-1-carboxy-2-(1H-imidazol-5-yl)ethyl]amino}propyl]-L-glutamic acid · ligand · 2 copies · chains A, B
  • EDO · 1,2-ethanediol · additive · 8 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6PBP · Pseudopaline Dehydrogenase with (S)-Pseudopaline Soaked 1 hour · the same entry in another collection · chain A against A, TM-score 1.00
  • Q9HUX5 · AlphaFold monomer V2.0 prediction for pseudopaline synthase (Q9HUX5) · a predicted model of the same protein · chain A against A, TM-score 0.98

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