MolNFT v1 · #160071 · protein
E.COLI lpxa in complex with udp-3-O-(R-3-hydroxymyristoyl)-glcnac and compound 2
6P9Q: “E.COLI lpxa in complex with udp-3-O-(R-3-hydroxymyristoyl)-glcnac and compound 2”. X-ray diffraction, 3 ligands (U20, O5P, PO4). MolNFT v1 #160071 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6P9Q
- Type
- protein
- Length
- 263 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- W9AB79
- Ligands
- U20, O5P, PO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 263 | — | W9AB79 |
Ligands and binding sites
- U20 · uridine-5'-diphosphate-3-O-(R-3-hydroxymyristoyl)-N-acetyl-D-glucosamine · ligand · chains A
- O5P · [(3R)-3-benzylmorpholin-4-yl][5-(4-methylpyridin-2-yl)-1H-pyrazol-3-yl]methanone · ligand · chains A
- PO4 · Phosphate ion · ion · 2 copies · chains A
- DMS · Dimethyl sulfoxide · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6P9Q · E.coli LpxA in complex with UDP-3-O-(R-3-hydroxymyristoyl)-GlcNAc and Compound 2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt W9AB79
- Elsewhere: RCSB PDB 6P9Q · PDBe 6P9Q · UniProt W9AB79
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