MolNFT v1 · #160037 · protein
Structure of P. aeruginosa ATCC27853 HORMA2
6P8R · Horma domain containing protein: “Structure of P. aeruginosa ATCC27853 HORMA2”. X-ray diffraction, 1 ligand (PO4), 7 pockets (best druggability 0.80). MolNFT v1 #160037 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6P8R
- Type
- protein
- Length
- 658 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Horma domain containing protein
- UniProt
- Q8GQ50
- Ligands
- PO4
- Pockets
- 7 · best druggability 0.80
Structure
x-ray diffraction · 4 distinct chains · 30% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Horma domain containing protein | protein | 167 | 31% helix, 35% strand | Q8GQ50 |
| B | Horma domain containing protein | protein | 168 | 30% helix, 35% strand | Q8GQ50 |
| C | Horma domain containing protein | protein | 163 | 30% helix, 34% strand | Q8GQ50 |
| D | Horma domain containing protein | protein | 160 | 31% helix, 38% strand | Q8GQ50 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1091 | 0.80 | 0.81 | 116 | empty |
| 2 | 187 | 0.49 | 0.76 | 30 | empty |
| 3 | 66 | 0.47 | 0.83 | 17 | empty |
| 4 | 93 | 0.45 | 0.80 | 21 | empty |
| 5 | 90 | 0.36 | 0.75 | 16 | empty |
Interfaces
6 interfaces between chains.
- B–D · 934 Ų buried · 17 hydrogen bonds · protein-protein
- A–D · 700 Ų buried · 14 hydrogen bonds · protein-protein
- A–B · 350 Ų buried · 1 hydrogen bond · protein-protein
- A–C · 273 Ų buried · 3 hydrogen bonds · protein-protein
- C–D · 239 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 6P8R · Structure of P. aeruginosa ATCC27853 HORMA2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8GQ50
- Elsewhere: RCSB PDB 6P8R · PDBe 6P8R · UniProt Q8GQ50
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