MolNFT v1 · #160000 · protein + RNA

Structure of E. COLI MS115-1 nucc, 5'-papa bound form

6P7Q: “Structure of E. COLI MS115-1 nucc, 5'-papa bound form”. X-ray diffraction, 1 ligand (CL). MolNFT v1 #160000 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6P7Q
Type: protein + RNA
Length: 728 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: D7Y2H5
Ligands: CL

Structure

x-ray diffraction · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	240	—	D7Y2H5
B	—	protein	240	—	D7Y2H5
C	—	protein	242	—	D7Y2H5
D, E, F	—	rna	2	—	—

Ligands and binding sites

CL · Chloride ion · ion · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6P7Q · Structure of E. coli MS115-1 NucC, 5'-pApA bound form · the same entry in another collection · chain A against A, TM-score 1.00
D7Y2H5 · AlphaFold monomer V2.0 prediction for endodeoxyribonuclease nucc (D7Y2H5) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D7Y2H5
Elsewhere: RCSB PDB 6P7Q · PDBe 6P7Q · UniProt D7Y2H5

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