MolNFT v1 · #159959 · protein
Structure of ybtpq importer
6P6I · Inner membrane ABC-transporter: “Structure of ybtpq importer”. Electron microscopy, 15 pockets (best druggability 0.85). MolNFT v1 #159959 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6P6I
- Type
- protein
- Length
- 1,133 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Inner membrane ABC-transporter; ABC transporter protein
- UniProt
- Q1RAG2, Q1RAG3
- Pockets
- 15 · best druggability 0.85
Structure
electron microscopy · 2 distinct chains · 61% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Inner membrane ABC-transporter | protein | 565 | 59% helix, 5% strand | Q1RAG2 |
| B | ABC transporter protein | protein | 568 | 62% helix, 7% strand | Q1RAG3 |
Pockets
15 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1132 | 0.85 | 0.86 | 100 | empty |
| 2 | 769 | 0.69 | 0.76 | 71 | empty |
| 3 | 177 | 0.67 | 0.86 | 25 | empty |
| 4 | 352 | 0.65 | 0.79 | 33 | empty |
| 5 | 312 | 0.61 | 0.77 | 28 | empty |
Interfaces
1 interface between chains.
- A–B · 6585 Ų buried · 41 hydrogen bonds · protein-protein
Compared structures
- 6P6I · Structure of YbtPQ importer · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1RAG2
- Every structure of UniProt Q1RAG3
- Elsewhere: RCSB PDB 6P6I · PDBe 6P6I · UniProt Q1RAG2 · UniProt Q1RAG3
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