MolNFT v1 · #159766 · protein + DNA
N-terminal domain of thermococcus gammatolerans mcrb bound to M5C DNA
6P0G · GTPase subunit of restriction endonuclease: “N-terminal domain of thermococcus gammatolerans mcrb bound to M5C DNA”. X-ray diffraction. MolNFT v1 #159766 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6P0G
- Type
- protein + DNA
- Length
- 185 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GTPase subunit of restriction endonuclease; DNA (5'-D(P*TP*AP*CP*CP*GP*G)-3'); DNA…
- UniProt
- C5A3Z3
Structure
x-ray diffraction · 3 distinct chains · 31% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | GTPase subunit of restriction endonuclease | protein | 173 | 31% helix, 32% strand | C5A3Z3 |
| B | DNA (5'-D(P*TP*AP*CP*CP*GP*G)-3') | dna | 6 | — | — |
| C | DNA (5'-D(P*AP*CP*CP*GP*GP*T)-3') | dna | 6 | — | — |
Interfaces
3 interfaces between chains.
- A–B · 535 Ų buried · 3 hydrogen bonds · protein-nucleic
- A–C · 449 Ų buried · 11 hydrogen bonds · protein-nucleic
- B–C · 234 Ų buried · 20 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 3 modified, 2 disulfide (engineered, disulfide).
Compared structures
- 6P0G · N-terminal domain of Thermococcus Gammatolerans McrB bound to m5C DNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C5A3Z3
- Elsewhere: RCSB PDB 6P0G · PDBe 6P0G · UniProt C5A3Z3
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