MolNFT v1 · #159765 · protein

N-terminal domain of thermococcus gammatolerans mcrb

6P0F · GTPase subunit of restriction endonuclease: “N-terminal domain of thermococcus gammatolerans mcrb”. X-ray diffraction, 2 ligands (SO4, NH4), 1 pocket (best druggability 0.36). MolNFT v1 #159765 on GenesisL1: 3D structure, binding…

PDB: 6P0F
Type: protein
Length: 175 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: GTPase subunit of restriction endonuclease
UniProt: C5A3Z3
Ligands: SO4, NH4
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 33% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	GTPase subunit of restriction endonuclease	protein	175	33% helix, 32% strand	C5A3Z3

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A
NH4 · Ammonium ion · ion · chains A
MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	63	0.36	0.77	15	empty

Modifications

Observed in the structure: 4 modified, 2 disulfide (engineered, disulfide).

Compared structures

6P0F · N-terminal domain of Thermococcus Gammatolerans McrB · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C5A3Z3
Elsewhere: RCSB PDB 6P0F · PDBe 6P0F · UniProt C5A3Z3

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