MolNFT v1 · #15962 · protein
Visualizing an unstable coiled coil: the crystal structure of an N-terminal segment of the scallop myosin rod
1NKN · S2N51-GCN4: “Visualizing an unstable coiled coil: the crystal structure of an N-terminal segment of the scallop myosin rod”. X-ray diffraction, 1 pocket (best druggability 0.60). MolNFT v1 #15962 on GenesisL1: 3D structure, binding…
- PDB
- 1NKN
- Type
- protein
- Length
- 301 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- S2N51-GCN4
- UniProt
- P03069
- Pockets
- 1 · best druggability 0.60
Structure
x-ray diffraction · 3 distinct chains · 94% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | S2N51-GCN4 | protein | 74 | 95% helix, 0% strand | P03069 |
| B, D | S2N51-GCN4 | protein | 76 | 93% helix, 0% strand | P03069 |
| C | S2N51-GCN4 | protein | 75 | 95% helix, 0% strand | P03069 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 421 | 0.60 | 0.76 | 51 | empty |
Interfaces
6 interfaces between chains.
- C–D · 2064 Ų buried · 11 hydrogen bonds · protein-protein
- A–B · 2025 Ų buried · 10 hydrogen bonds · protein-protein
- A–C · 487 Ų buried · 8 hydrogen bonds · protein-protein
- A–D · 137 Ų buried · 1 hydrogen bond · protein-protein
- B–C · 112 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 1NKN · Visualizing an unstable coiled coil: the crystal structure of an N-terminal segment of… · the same entry in another collection · chain D against D, TM-score 1.00
- P03069 · AlphaFold monomer V2.0 prediction for general control transcription factor GCN4 (P03069) · a predicted model of the same protein · chain A against A, TM-score 0.67
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03069
- Elsewhere: RCSB PDB 1NKN · PDBe 1NKN · UniProt P03069
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