MolNFT v1 · #159433 · protein
Structure of oxidized vim-20
6OP7 · Metallo-beta-lactamase vim-20: “Structure of oxidized vim-20”. X-ray diffraction, 1 ligand (ZN), 1 pocket (best druggability 0.47). MolNFT v1 #159433 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6OP7
- Type
- protein
- Length
- 229 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Metallo-beta-lactamase vim-20
- UniProt
- A0A344X7M2
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Metallo-beta-lactamase vim-20 | protein | 229 | 26% helix, 31% strand | A0A344X7M2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 137 | 0.47 | 0.78 | 21 | ZN |
Modifications
Observed in the structure: 1 modified (oxidation).
Compared structures
- 6OP7 · Structure of oxidized VIM-20 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A344X7M2
- Elsewhere: RCSB PDB 6OP7 · PDBe 6OP7 · UniProt A0A344X7M2
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