MolNFT v1 · #159401 · protein
Human CYP3A4 bound to a suicide substrate
6OOB · Cytochrome P450 3A4: “Human CYP3A4 bound to a suicide substrate”. X-ray diffraction, 2 ligands (HEM, MWS), 4 pockets (best druggability 0.87). MolNFT v1 #159401 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6OOB
- Type
- protein
- Length
- 457 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome P450 3A4
- EC
- 1.14.14.-, 1.14.14.56, 1.14.14.73, 1.14.14.55
- UniProt
- P08684
- Ligands
- HEM, MWS
- Pockets
- 4 · best druggability 0.87
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome P450 3A4 (EC 1.14.14.-, 1.14.14.56, 1.14.14.73, 1.14.14.55) | protein | 457 | 51% helix, 9% strand | P08684 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- MWS · 4-{[(2Z,6S)-6,7-dihydroxy-3,7-dimethyloct-2-en-1-yl]oxy}-7H-furo[3,2-g][1]benzopyran-7-one · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 914 | 0.87 | 0.89 | 72 | HEM, MWS |
| 2 | 219 | 0.48 | 0.74 | 29 | empty |
| 3 | 133 | 0.46 | 0.78 | 21 | empty |
| 4 | 117 | 0.43 | 0.77 | 27 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08684
- Elsewhere: RCSB PDB 6OOB · PDBe 6OOB · UniProt P08684
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