MolNFT v1 · #159374 · protein
Crystal structure of ppargamma ligand binding domain in complex with TRAP220 peptide and agonist rosiglitazone
6ONJ: “Crystal structure of ppargamma ligand binding domain in complex with TRAP220 peptide and agonist rosiglitazone”. X-ray diffraction, 1 ligand (BRL). MolNFT v1 #159374 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ONJ
- Type
- protein
- Length
- 272 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P37231, Q15648
- Ligands
- BRL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 258 | — | P37231 |
| C | — | protein | 14 | — | Q15648 |
Ligands and binding sites
- BRL · 2,4-thiazolidiinedione, 5-[[4-[2-(methyl-2-pyridinylamino)ethoxy]phenyl]methyl]-(9CL) · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6ONJ · Crystal structure of PPARgamma ligand binding domain in complex with TRAP220 peptide and… · the same entry in another collection · chain A against A, TM-score 1.00
- Q15648 · AlphaFold monomer V2.0 prediction for mediator of RNA polymerase II transcription subunit… · a predicted model of the same protein · chain C against A, TM-score 0.62
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P37231
- Every structure of UniProt Q15648
- Elsewhere: RCSB PDB 6ONJ · PDBe 6ONJ · UniProt P37231 · UniProt Q15648
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