MolNFT v1 · #159347 · protein

Arabidopsis GH3.12 with chorismate

6OMS: “Arabidopsis GH3.12 with chorismate”. X-ray diffraction, 2 ligands (AMP, ISJ). MolNFT v1 #159347 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6OMS
Type: protein
Length: 979 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q9LYU4
Ligands: AMP, ISJ

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	487	—	Q9LYU4
B	—	protein	492	—	Q9LYU4

Ligands and binding sites

AMP · Adenosine monophosphate · ligand · 2 copies · chains A, B
ISJ · (3R,4R)-3-[(1-carboxyethenyl)oxy]-4-hydroxycyclohexa-1, 5-diene-1-carboxylic acid · ligand · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6OMS · Arabidopsis GH3.12 with Chorismate · the same entry in another collection · chain A against A, TM-score 1.00
Q9LYU4 · AlphaFold monomer V2.0 prediction for 4-substituted benzoates- glutamate ligase GH3.12… · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9LYU4
Elsewhere: RCSB PDB 6OMS · PDBe 6OMS · UniProt Q9LYU4

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