MolNFT v1 · #159330 · protein
Structure of a haemophore from haemophilus haemolyticus
6OM5: “Structure of a haemophore from haemophilus haemolyticus”. X-ray diffraction, 3 ligands (HEM, SO4, CL), 1 pocket (best druggability 0.72). MolNFT v1 #159330 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6OM5
- Type
- protein
- Length
- 252 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Haemophore
- Ligands
- HEM, SO4, CL
- Pockets
- 1 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Haemophore | protein | 252 | 12% helix, 45% strand | — |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- SO4 · Sulfate ion · ion · 3 copies · chains A
- CL · Chloride ion · ion · 2 copies · chains A
- GOL · Glycerol · additive · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 264 | 0.72 | 0.86 | 31 | HEM, CL |
Compared structures
- 6OM5 · Structure of a haemophore from Haemophilus haemolyticus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6OM5 · PDBe 6OM5
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