MolNFT v1 · #159260 · protein

Comparative model of sgiv major coat protein (mcp) trimer based on cryo-EM MAP

6OJN · Major capsid protein: “Comparative model of sgiv major coat protein (mcp) trimer based on cryo-EM MAP”. Electron microscopy, 20 pockets (best druggability 0.76). MolNFT v1 #159260 on GenesisL1: 3D structure, binding sites and…

PDB: 6OJN
Type: protein
Length: 1,269 residues
Chains: 3
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Major capsid protein
UniProt: Q5YFJ3
Pockets: 20 · best druggability 0.76

Structure

electron microscopy · 1 distinct chain · 8% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	Major capsid protein	protein	423	8% helix, 22% strand	Q5YFJ3

Pockets

20 pockets found on a 1 Å grid, 15 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	471	0.76	0.84	67	empty
2	249	0.74	0.87	51	empty
3	414	0.73	0.83	60	empty
4	359	0.72	0.84	56	empty
5	53	0.71	0.97	18	empty

Interfaces

3 interfaces between chains.

A–C · 1783 Å² buried · 18 hydrogen bonds · protein-protein
B–C · 1716 Å² buried · 16 hydrogen bonds · protein-protein
A–B · 1634 Å² buried · 14 hydrogen bonds · protein-protein

Compared structures

6OJN · Comparative Model of SGIV Major Coat Protein (MCP) Trimer Based on Cryo-EM Map · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5YFJ3
Elsewhere: RCSB PDB 6OJN · PDBe 6OJN · UniProt Q5YFJ3

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