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MolNFT v1 · #159241 · protein

Xfel structure of escherichia COLI dgtpase

6OIV: “Xfel structure of escherichia COLI dgtpase”. X-ray diffraction, 2 ligands (MN, SO4). MolNFT v1 #159241 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6OIV
Type
protein
Length
2,977 residues
Chains
6
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P15723
Ligands
MN, SO4

Structure

x-ray diffraction · 5 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein498—P15723
B—protein488—P15723
C, E—protein497—P15723
D—protein495—P15723
F—protein502—P15723

Ligands and binding sites

  • MN · Manganese (II) ion · metal · 6 copies · chains A, B, C, D, E, F
  • SO4 · Sulfate ion · ion · 9 copies · chains A, B, C, E, D, F

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6OIV · XFEL structure of Escherichia coli dGTPase · the same entry in another collection · chain F against F, TM-score 1.00
  • P15723 · AlphaFold monomer V2.0 prediction for deoxyguanosinetriphosphate triphosphohydrolase… · a predicted model of the same protein · chain B against A, TM-score 0.99

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