MolNFT v1 · #159202 · protein
Structure of compound 1 (halopemide) bound human phospholipase D2 catalytic domain
6OHP: “Structure of compound 1 (halopemide) bound human phospholipase D2 catalytic domain”. X-ray diffraction, 2 ligands (MJV, SO4). MolNFT v1 #159202 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6OHP
- Type
- protein
- Length
- 2,331 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O14939
- Ligands
- MJV, SO4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 586 | — | O14939 |
| B | — | protein | 584 | — | O14939 |
| C | — | protein | 579 | — | O14939 |
| D | — | protein | 582 | — | O14939 |
Ligands and binding sites
- MJV · N-{2-[4-(5-chloro-2-oxo-2,3-dihydro-1H-benzimidazol-1-yl)piperidin-1-yl]ethyl}-4-fluorobenzamide · ligand · 4 copies · chains A, B, D, C
- SO4 · Sulfate ion · ion · 5 copies · chains A, B
- GOL · Glycerol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6OHP · Structure of compound 1 (halopemide) bound human Phospholipase D2 catalytic domain · the same entry in another collection · chain D against D, TM-score 1.00
- O14939 · AlphaFold monomer V2.0 prediction for phospholipase D2 (O14939) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O14939
- Elsewhere: RCSB PDB 6OHP · PDBe 6OHP · UniProt O14939
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