MolNFT v1 · #159166 · protein + DNA

MECP2 mbd in complex with DNA

6OGJ: “MECP2 mbd in complex with DNA”. X-ray diffraction, 1 ligand (UNX). MolNFT v1 #159166 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6OGJ
Type: protein + DNA
Length: 183 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P51608
Ligands: UNX

Structure

x-ray diffraction · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	77	—	P51608
B	—	protein	82	—	P51608
D	—	dna	12	—	—
C	—	dna	12	—	—

Ligands and binding sites

UNX · Unknown atom or ion · ion · 8 copies · chains A, C, B, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6OGJ · MeCP2 MBD in complex with DNA · the same entry in another collection · chain A against A, TM-score 1.00
P51608 · AlphaFold monomer V2.0 prediction for methyl-cpg-binding protein 2 (P51608) · a predicted model of the same protein · chain A against A, TM-score 0.87

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P51608
Elsewhere: RCSB PDB 6OGJ · PDBe 6OGJ · UniProt P51608

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