MolNFT v1 · #159076 · protein
Eeev glycoproteins bound with heparan sulfate
6ODF: “Eeev glycoproteins bound with heparan sulfate”. Electron microscopy, 2 ligands (U9A, U97). MolNFT v1 #159076 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ODF
- Type
- protein
- Length
- 3,396 residues
- Chains
- 8
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- E9KXM2, E9KXL2
- Ligands
- U9A, U97
Structure
electron microscopy · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, E, G | — | protein | 430 | — | E9KXM2 |
| B, D, F, H | — | protein | 419 | — | E9KXL2 |
Ligands and binding sites
- U9A · [(2R,3R,4R,5R,6R)-2,4,5-trihydroxy-6-(sulfooxy) tetrahydro-2H-pyran-3-yl]sulfamic acid · ligand · 6 copies · chains B, D, F, H
- U97 · 2-O-sulfo-beta-L-galactopyranuronic acid · ligand · 6 copies · chains B, D, F, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6ODF · EEEV glycoproteins bound with heparan sulfate · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E9KXM2
- Every structure of UniProt E9KXL2
- Elsewhere: RCSB PDB 6ODF · PDBe 6ODF · UniProt E9KXM2 · UniProt E9KXL2
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