MolNFT v1 · #159071 · protein
Crystal structure of HDAC8 in complex with compound 2
6ODA: “Crystal structure of HDAC8 in complex with compound 2”. X-ray diffraction, 3 ligands (C7, K, ZN). MolNFT v1 #159071 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ODA
- Type
- protein
- Length
- 1,080 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9BY41
- Ligands
- C7, K, ZN
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 364 | — | Q9BY41 |
| B | — | protein | 363 | — | Q9BY41 |
| C | — | protein | 353 | — | Q9BY41 |
Ligands and binding sites
- C7 · N-{2-[3-(hydroxyamino)-3-oxopropyl]phenyl}-3-(trifluoromethyl)benzamide · ligand · 3 copies · chains A, B, C
- K · Potassium ion · metal · 6 copies · chains A, B, C
- ZN · Zinc ion · metal · 3 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6ODA · Crystal structure of HDAC8 in complex with compound 2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9BY41
- Elsewhere: RCSB PDB 6ODA · PDBe 6ODA · UniProt Q9BY41
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