MolNFT v1 · #158990 · protein

Crystal structure of a CRISPR CAS-related protein

6OAW · WYL1: “Crystal structure of a CRISPR CAS-related protein”. X-ray diffraction, 1 ligand (UNX), 7 pockets (best druggability 0.84). MolNFT v1 #158990 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6OAW
Type: protein
Length: 772 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: WYL1
UniProt: A0A352D0K5
Ligands: UNX
Pockets: 7 · best druggability 0.84

Structure

x-ray diffraction · 2 distinct chains · 45% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	WYL1	protein	385	45% helix, 18% strand	A0A352D0K5
B	WYL1	protein	387	44% helix, 18% strand	A0A352D0K5

Ligands and binding sites

UNX · Unknown atom or ion · ion · 31 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1060	0.84	0.85	82	UNX
2	1043	0.77	0.79	100	UNX
3	213	0.62	0.82	20	empty
4	205	0.57	0.80	38	UNX
5	72	0.37	0.78	18	UNX

Interfaces

1 interface between chains.

A–B · 2286 Å² buried · 6 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 11 modified (engineered).

Compared structures

6OAW · Crystal structure of a CRISPR Cas-related protein · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A352D0K5
Elsewhere: RCSB PDB 6OAW · PDBe 6OAW · UniProt A0A352D0K5

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