MolNFT v1 · #158986 · protein
Structure of canine parvovirus in complex with transferrin receptor type-1
6OAS · Capsid protein VP1: “Structure of canine parvovirus in complex with transferrin receptor type-1”. Electron microscopy, 13 pockets (best druggability 0.68). MolNFT v1 #158986 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6OAS
- Type
- protein
- Length
- 548 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein VP1
- UniProt
- Q11213
- Pockets
- 13 · best druggability 0.68
Structure
electron microscopy · 1 distinct chain · 8% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 1 | Capsid protein VP1 | protein | 548 | 8% helix, 30% strand | Q11213 |
Pockets
13 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 51 | 0.68 | 0.97 | 16 | empty |
| 2 | 67 | 0.66 | 0.93 | 16 | empty |
| 3 | 250 | 0.64 | 0.82 | 50 | empty |
| 4 | 410 | 0.56 | 0.74 | 40 | empty |
| 5 | 216 | 0.53 | 0.77 | 26 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 6OAS · Structure of canine parvovirus in complex with transferrin receptor type-1 · the same entry in another collection · chain 1 against 1, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q11213
- Elsewhere: RCSB PDB 6OAS · PDBe 6OAS · UniProt Q11213
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