MolNFT v1 · #158979 · protein
Structure of human parg complexed with JA2120
6OAL · POLY(ADP-ribose) glycohydrolase: “Structure of human parg complexed with JA2120”. X-ray diffraction, 1 ligand (M0P), 4 pockets (best druggability 0.68). MolNFT v1 #158979 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6OAL
- Type
- protein
- Length
- 499 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- POLY(ADP-ribose) glycohydrolase
- EC
- 3.2.1.143
- UniProt
- Q86W56
- Ligands
- M0P
- Pockets
- 4 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | POLY(ADP-ribose) glycohydrolase (EC 3.2.1.143) | protein | 499 | 41% helix, 14% strand | Q86W56 |
Ligands and binding sites
- M0P · 1,3-dimethyl-8-{[2-(morpholin-4-yl)ethyl]sulfanyl}-3,7-dihydro-1H-purine-2,6-dione · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 463 | 0.68 | 0.79 | 39 | empty |
| 2 | 265 | 0.65 | 0.82 | 30 | M0P |
| 3 | 71 | 0.38 | 0.79 | 20 | empty |
| 4 | 80 | 0.36 | 0.75 | 12 | empty |
Modifications
Observed in the structure: 1 modified (artifact).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q86W56
- Elsewhere: RCSB PDB 6OAL · PDBe 6OAL · UniProt Q86W56
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