MolNFT v1 · #158882 · protein
Mycobacterium tuberculosis L-alanine dehydrogenase X-ray structure in complex with N6-isobutyl adenosine
6O7F: “Mycobacterium tuberculosis L-alanine dehydrogenase X-ray structure in complex with N6-isobutyl adenosine”. X-ray diffraction, 1 ligand (NKV), 1 pocket (best druggability 0.72). MolNFT v1 #158882 on GenesisL1: 3D structure, binding…
- PDB
- 6O7F
- Type
- protein
- Length
- 371 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alanine dehydrogenase
- EC
- 1.4.1.1
- UniProt
- P9WQB1
- Ligands
- NKV
- Pockets
- 1 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alanine dehydrogenase (EC 1.4.1.1) | protein | 371 | 42% helix, 17% strand | P9WQB1 |
Ligands and binding sites
- NKV · N-(2-methylpropanoyl)adenosine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 596 | 0.72 | 0.80 | 83 | NKV |
Compared structures
- 6O7F · Mycobacterium tuberculosis L-alanine dehydrogenase x-ray structure in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
- P9WQB1 · AlphaFold monomer V2.0 prediction for alanine dehydrogenase (P9WQB1) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P9WQB1
- Elsewhere: RCSB PDB 6O7F · PDBe 6O7F · UniProt P9WQB1
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.