MolNFT v1 · #158841 · protein
Crystal structure of double mutant L380R/F535K of human acetylcholinesterase
6O69: “Crystal structure of double mutant L380R/F535K of human acetylcholinesterase”. X-ray diffraction, 2 ligands (NAG, FUC), 5 pockets (best druggability 0.74). MolNFT v1 #158841 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6O69
- Type
- protein
- Length
- 531 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Acetylcholinesterase
- EC
- 3.1.1.7
- UniProt
- P22303
- Ligands
- NAG, FUC
- Pockets
- 5 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Acetylcholinesterase (EC 3.1.1.7) | protein | 531 | 37% helix, 18% strand | P22303 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
- FUC · alpha-L-fucopyranose · sugar · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 213 | 0.74 | 0.89 | 35 | empty |
| 2 | 284 | 0.53 | 0.75 | 38 | empty |
| 3 | 77 | 0.45 | 0.81 | 16 | empty |
| 4 | 87 | 0.45 | 0.80 | 19 | empty |
| 5 | 78 | 0.33 | 0.75 | 15 | empty |
Modifications
Observed in the structure: 2 disulfide, 1 glycan (disulfide, N-glycosylation).
Compared structures
- 6O69 · Crystal Structure of Double Mutant L380R/F535K of Human Acetylcholinesterase · the same entry in another collection · chain A against A, TM-score 1.00
- P22303 · AlphaFold monomer V2.0 prediction for acetylcholinesterase (P22303) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P22303
- Elsewhere: RCSB PDB 6O69 · PDBe 6O69 · UniProt P22303
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