MolNFT v1 · #158818 · protein
Murine TRIM28 BBOX1 domain
6O5K · Transcription intermediary factor 1-beta: “Murine TRIM28 BBOX1 domain”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #158818 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6O5K
- Type
- protein
- Length
- 89 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transcription intermediary factor 1-beta
- EC
- 2.3.2.27
- UniProt
- Q62318
- Ligands
- ZN
Structure
x-ray diffraction · 2 distinct chains · 19% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transcription intermediary factor 1-beta (EC 2.3.2.27) | protein | 46 | 17% helix, 24% strand | Q62318 |
| B | Transcription intermediary factor 1-beta (EC 2.3.2.27) | protein | 43 | 21% helix, 21% strand | Q62318 |
Ligands and binding sites
- ZN · Zinc ion · metal · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 617 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q62318
- Elsewhere: RCSB PDB 6O5K · PDBe 6O5K · UniProt Q62318
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