MolNFT v1 · #158701 · protein
Structure of PCW3 conjugation coupling protein tcpa monomer orthorhombic crystal form
6O1W · DNA translocase coupling protein: “Structure of PCW3 conjugation coupling protein tcpa monomer orthorhombic crystal form”. X-ray diffraction, 1 ligand (BGC), 5 pockets (best druggability 0.53). MolNFT v1 #158701 on GenesisL1: 3D…
- PDB
- 6O1W
- Type
- protein
- Length
- 702 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA translocase coupling protein
- UniProt
- Q1PLI0
- Ligands
- BGC
- Pockets
- 5 · best druggability 0.53
Structure
x-ray diffraction · 2 distinct chains · 37% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA translocase coupling protein | protein | 353 | 37% helix, 24% strand | Q1PLI0 |
| B | DNA translocase coupling protein | protein | 349 | 36% helix, 23% strand | Q1PLI0 |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · 5 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 172 | 0.53 | 0.79 | 26 | empty |
| 2 | 115 | 0.48 | 0.80 | 23 | empty |
| 3 | 53 | 0.35 | 0.79 | 13 | empty |
| 4 | 67 | 0.30 | 0.75 | 16 | empty |
| 5 | 60 | 0.28 | 0.74 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 1033 Ų buried · 14 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 6O1W · Structure of pCW3 conjugation coupling protein TcpA monomer orthorhombic crystal form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1PLI0
- Elsewhere: RCSB PDB 6O1W · PDBe 6O1W · UniProt Q1PLI0
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