MolNFT v1 · #158632 · protein

Hadesarchaea YNP_N21 cytochrome B5 domain protein (KUO41884.1)

6NZX: “Hadesarchaea YNP_N21 cytochrome B5 domain protein (KUO41884.1)”. X-ray diffraction, 1 ligand (HEM), 1 pocket (best druggability 0.58). MolNFT v1 #158632 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6NZX
Type: protein
Length: 76 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome B5
UniProt: A0A147JZ41
Ligands: HEM
Pockets: 1 · best druggability 0.58

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome B5	protein	76	25% helix, 30% strand	A0A147JZ41

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	111	0.58	0.85	24	HEM

Modifications

Observed in the structure: 1 cofactor (heme attachment).

Compared structures

6NZX · Hadesarchaea YNP_N21 cytochrome b5 domain protein (KUO41884.1) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A147JZ41
Elsewhere: RCSB PDB 6NZX · PDBe 6NZX · UniProt A0A147JZ41

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