MolNFT v1 · #158351 · protein

Rerefinement of chicken vinculin

6NR7: “Rerefinement of chicken vinculin”. X-ray diffraction, 3 ligands (KYG, SO4, PO4). MolNFT v1 #158351 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6NR7
Type: protein
Length: 1,086 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P12003
Ligands: KYG, SO4, PO4

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	1086	—	P12003

Ligands and binding sites

KYG · (1R,2R,3S,4R,5R,6S)-4-{[(S)-[(2S)-2,3-dihydroxypropoxy](hydroxy)phosphoryl]oxy}-3,5,6-trihydroxycyclohexane-1,2-diyl bis[dihydrogen (phosphate)] · ligand · chains A
SO4 · Sulfate ion · ion · 2 copies · chains A
PO4 · Phosphate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6NR7 · Rerefinement of chicken vinculin · the same entry in another collection · chain A against A, TM-score 1.00
P12003 · AlphaFold monomer V2.0 prediction for vinculin (P12003) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P12003
Elsewhere: RCSB PDB 6NR7 · PDBe 6NR7 · UniProt P12003

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