MolNFT v1 · #158290 · protein
Crystal structure of epstein-barr virus nuclear antigen-1, EBNA1, bound to fragments
6NPI · Epstein-barr nuclear antigen 1: “Crystal structure of epstein-barr virus nuclear antigen-1, EBNA1, bound to fragments”. X-ray diffraction, 2 ligands (60Q, KW1). MolNFT v1 #158290 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 6NPI
- Type
- protein
- Length
- 274 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Epstein-barr nuclear antigen 1
- UniProt
- P03211
- Ligands
- 60Q, KW1
Structure
x-ray diffraction · 2 distinct chains · 34% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Epstein-barr nuclear antigen 1 | protein | 140 | 34% helix, 27% strand | P03211 |
| B | Epstein-barr nuclear antigen 1 | protein | 134 | 34% helix, 28% strand | P03211 |
Ligands and binding sites
- 60Q · 2-pyrrol-1-ylbenzoic acid · ligand · chains B
- KW1 · ({2-[(4-bromo-5-methyl-1,2-oxazol-3-yl)amino]-2-oxoethyl}sulfanyl)acetic acid · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 2024 Ų buried · 26 hydrogen bonds · protein-protein
Compared structures
- 6NPI · Crystal structure of Epstein-Barr Virus Nuclear Antigen-1, EBNA1, bound to fragments · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03211
- Elsewhere: RCSB PDB 6NPI · PDBe 6NPI · UniProt P03211
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