MolNFT v1 · #158283 · protein
X-ray crystal structure of tmpb, (R)-1-hydroxy-2- trimethylaminoethylphosphonate oxygenase, with (R)-1-hydroxy-2- trimethylaminoethylphosphonate
6NPA: “X-ray crystal structure of tmpb, (R)-1-hydroxy-2- trimethylaminoethylphosphonate oxygenase, with…”. X-ray diffraction, 3 ligands (KVP, FE, FE2). MolNFT v1 #158283 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6NPA
- Type
- protein
- Length
- 737 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- KVP, FE, FE2
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 188 | — | — |
| B | — | protein | 187 | — | — |
| C, D | — | protein | 181 | — | — |
Ligands and binding sites
- KVP · (2R)-2-hydroxy-N,N,N-trimethyl-2-phosphonoethan-1-aminium · ligand · 2 copies · chains C, D
- FE · Fe (III) ion · metal · 6 copies · chains A, B, C, D
- FE2 · Fe (II) ion · metal · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6NPA · X-ray crystal structure of TmpB, (R)-1-hydroxy-2-trimethylaminoethylphosphonate… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6NPA · PDBe 6NPA
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