MolNFT v1 · #158261 · protein
Structure of cyanothece mcda-amppnp complex
6NOO · Maintenance of carboxysome positioning a protein, mcda: “Structure of cyanothece mcda-amppnp complex”. X-ray diffraction, 2 ligands (ATP, MG), 4 pockets (best druggability 0.47). MolNFT v1 #158261 on GenesisL1: 3D structure, binding…
- PDB
- 6NOO
- Type
- protein
- Length
- 518 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Maintenance of carboxysome positioning a protein, mcda
- Ligands
- ATP, MG
- Pockets
- 4 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Maintenance of carboxysome positioning a protein, mcda | protein | 259 | 45% helix, 17% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 173 | 0.47 | 0.76 | 24 | ATP, MG |
| 2 | 55 | 0.39 | 0.81 | 12 | empty |
| 3 | 60 | 0.30 | 0.75 | 15 | empty |
| 4 | 50 | 0.26 | 0.74 | 11 | empty |
Interfaces
1 interface between chains.
- A–B · 666 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 6NOO · Structure of Cyanothece McdA-AMPPNP complex · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6NOO · PDBe 6NOO
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