MolNFT v1 · #158230 · protein
Xanthomonas citri dephospho-pgm in complex with glucose-1,6- bisphosphate
6NNT · Phosphoglucomutase: “Xanthomonas citri dephospho-pgm in complex with glucose-1,6- bisphosphate”. X-ray diffraction, 2 ligands (G16, MG), 2 pockets (best druggability 0.74). MolNFT v1 #158230 on GenesisL1: 3D structure, binding sites…
- PDB
- 6NNT
- Type
- protein
- Length
- 448 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphoglucomutase
- UniProt
- Q8PGN7
- Ligands
- G16, MG
- Pockets
- 2 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphoglucomutase | protein | 448 | 41% helix, 21% strand | Q8PGN7 |
Ligands and binding sites
- G16 · 1,6-di-O-phosphono-alpha-D-glucopyranose · ligand · chains A
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 514 | 0.74 | 0.83 | 54 | G16 |
| 2 | 52 | 0.31 | 0.77 | 14 | empty |
Compared structures
- 6NNT · Xanthomonas citri Dephospho-PGM in complex with glucose-1,6-bisphosphate · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8PGN7
- Elsewhere: RCSB PDB 6NNT · PDBe 6NNT · UniProt Q8PGN7
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