MolNFT v1 · #158074 · protein
Encapsulin iron storage compartment from quasibacillus thermotolerans
6NJ8 · Encapsulating protein for a dyp-type peroxidase: “Encapsulin iron storage compartment from quasibacillus thermotolerans”. Electron microscopy, 15 pockets (best druggability 0.77). MolNFT v1 #158074 on GenesisL1: 3D structure…
- PDB
- 6NJ8
- Type
- protein
- Length
- 1,129 residues
- Chains
- 7
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Encapsulating protein for a dyp-type peroxidase; Targeting peptide
- UniProt
- A0A0F5HPP7
- Pockets
- 15 · best druggability 0.77
Structure
electron microscopy · 2 distinct chains · 22% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Encapsulating protein for a dyp-type peroxidase | protein | 277 | 23% helix, 23% strand | A0A0F5HPP7 |
| E, F, G | Targeting peptide | protein | 7 | 0% helix, 0% strand | — |
Pockets
15 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 230 | 0.77 | 0.91 | 40 | empty |
| 2 | 685 | 0.75 | 0.80 | 76 | empty |
| 3 | 155 | 0.55 | 0.81 | 22 | empty |
| 4 | 168 | 0.52 | 0.79 | 23 | empty |
| 5 | 210 | 0.52 | 0.77 | 32 | empty |
Interfaces
8 interfaces between chains.
- C–D · 2093 Ų buried · 19 hydrogen bonds · protein-protein
- B–C · 1988 Ų buried · 18 hydrogen bonds · protein-protein
- A–D · 525 Ų buried · 5 hydrogen bonds · protein-protein
- B–E · 524 Ų buried · 8 hydrogen bonds · protein-protein
- D–G · 452 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 6NJ8 · Encapsulin iron storage compartment from Quasibacillus thermotolerans · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0F5HPP7
- Elsewhere: RCSB PDB 6NJ8 · PDBe 6NJ8 · UniProt A0A0F5HPP7
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