MolNFT v1 · #158031 · protein
Crystal structure of the beta lactamase class D ybxi from burkholderia thailandensis
6NI0 · Beta-lactamase: “Crystal structure of the beta lactamase class D ybxi from burkholderia thailandensis”. X-ray diffraction, 2 ligands (SO4, CL), 1 pocket (best druggability 0.55). MolNFT v1 #158031 on GenesisL1: 3D structure, binding…
- PDB
- 6NI0
- Type
- protein
- Length
- 246 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-lactamase
- EC
- 3.5.2.6
- UniProt
- A0A2Z4T9G7
- Ligands
- SO4, CL
- Pockets
- 1 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-lactamase (EC 3.5.2.6) | protein | 246 | 36% helix, 22% strand | A0A2Z4T9G7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 267 | 0.55 | 0.77 | 36 | CL, SO4 |
Modifications
Observed in the structure: 4 modified, 1 disulfide (engineered, disulfide).
Compared structures
- 6NI0 · Crystal Structure of the Beta Lactamase Class D YbxI from Burkholderia thailandensis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2Z4T9G7
- Elsewhere: RCSB PDB 6NI0 · PDBe 6NI0 · UniProt A0A2Z4T9G7
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.