MolNFT v1 · #15797 · protein
Ovotransferrin, N-terminal lobe, iron loaded open form
1NFT · Protein (ovotransferrin): “Ovotransferrin, N-terminal lobe, iron loaded open form”. X-ray diffraction, 3 ligands (NTA, FE, SO4), 3 pockets (best druggability 0.45). MolNFT v1 #15797 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1NFT
- Type
- protein
- Length
- 329 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (ovotransferrin)
- UniProt
- P02789
- Ligands
- NTA, FE, SO4
- Pockets
- 3 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein (ovotransferrin) | protein | 329 | 36% helix, 20% strand | P02789 |
Ligands and binding sites
- NTA · Nitrilotriacetic acid · ligand · chains A
- FE · Fe (III) ion · metal · chains A
- SO4 · Sulfate ion · ion · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 129 | 0.45 | 0.77 | 22 | empty |
| 2 | 140 | 0.39 | 0.73 | 31 | SO4 |
| 3 | 69 | 0.30 | 0.74 | 14 | empty |
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02789
- Elsewhere: RCSB PDB 1NFT · PDBe 1NFT · UniProt P02789
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