MolNFT v1 · #157954 · protein
Copc from pseudomonas fluorescens
6NFQ: “Copc from pseudomonas fluorescens”. X-ray diffraction, 2 ligands (CU, YT3), 2 pockets (best druggability 0.59). MolNFT v1 #157954 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6NFQ
- Type
- protein
- Length
- 289 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Copc
- Ligands
- CU, YT3
- Pockets
- 2 · best druggability 0.59
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 55% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Copc | protein | 96 | 0% helix, 56% strand | — |
| B | Copc | protein | 97 | 0% helix, 55% strand | — |
Ligands and binding sites
- CU · Copper (II) ion · metal · 3 copies · chains A, B, C
- YT3 · Yttrium (III) ion · metal · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 230 | 0.59 | 0.80 | 35 | empty |
| 2 | 62 | 0.32 | 0.76 | 21 | empty |
Interfaces
2 interfaces between chains.
- A–B · 691 Ų buried · 10 hydrogen bonds · protein-protein
- A–C · 329 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 6NFQ · CopC from Pseudomonas fluorescens · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6NFQ · PDBe 6NFQ
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