MolNFT v1 · #157941 · protein
Beta-lactamase shv-11 from klebsiella pneumoniae strain ntuh-K2044
6NFD: “Beta-lactamase shv-11 from klebsiella pneumoniae strain ntuh-K2044”. X-ray diffraction, 1 ligand (PO4), 2 pockets (best druggability 0.48). MolNFT v1 #157941 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6NFD
- Type
- protein
- Length
- 267 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-lactamase shv-11
- Ligands
- PO4
- Pockets
- 2 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-lactamase shv-11 | protein | 267 | 43% helix, 17% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 67 | 0.48 | 0.83 | 14 | empty |
| 2 | 76 | 0.31 | 0.74 | 16 | EDO |
Modifications
Observed in the structure: 9 modified (engineered).
Compared structures
- 6NFD · beta-lactamase SHV-11 from Klebsiella pneumoniae strain NTUH-K2044 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6NFD · PDBe 6NFD
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