MolNFT v1 · #15793 · protein
Structural refinement of the non-fluorescent flavoprotein from photobacterium leiognathi at 1.60 ångströms resolution
1NFP · Luxf gene product: “Structural refinement of the non-fluorescent flavoprotein from photobacterium leiognathi at 1.60 ångströms…”. X-ray diffraction, 3 ligands (FMN, MYR, SO4), 4 pockets (best druggability 0.68). MolNFT v1 #15793 on…
- PDB
- 1NFP
- Type
- protein
- Length
- 228 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Luxf gene product
- UniProt
- P09142
- Ligands
- FMN, MYR, SO4
- Pockets
- 4 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Luxf gene product | protein | 228 | 46% helix, 20% strand | P09142 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · 2 copies · chains A
- MYR · Myristic acid · ligand · 2 copies · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 197 | 0.68 | 0.85 | 26 | FMN, MYR |
| 2 | 142 | 0.48 | 0.78 | 20 | empty |
| 3 | 88 | 0.41 | 0.78 | 17 | empty |
| 4 | 54 | 0.25 | 0.73 | 14 | empty |
Compared structures
- 1NFP · Structural refinement of the non-fluorescent flavoprotein from photobacterium leiognathi… · the same entry in another collection · chain A against A, TM-score 1.00
- P09142 · AlphaFold monomer V2.0 prediction for non-fluorescent flavoprotein (P09142) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P09142
- Elsewhere: RCSB PDB 1NFP · PDBe 1NFP · UniProt P09142
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