MolNFT v1 · #157918 · protein

Crystal structure of ppra filament from deinococcus radiodurans

6NEO · DNA repair protein ppra: “Crystal structure of ppra filament from deinococcus radiodurans”. X-ray diffraction, 3 pockets (best druggability 0.79). MolNFT v1 #157918 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6NEO
Type: protein
Length: 258 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA repair protein ppra
UniProt: O32504
Pockets: 3 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	DNA repair protein ppra	protein	258	44% helix, 17% strand	O32504

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	979	0.79	0.81	101	empty
2	342	0.64	0.80	41	empty
3	156	0.45	0.76	29	empty

Compared structures

6NEO · Crystal structure of PprA filament from Deinococcus radiodurans · the same entry in another collection · chain B against B, TM-score 1.00
O32504 · AlphaFold monomer V2.0 prediction for DNA repair protein ppra (O32504) · a predicted model of the same protein · chain B against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O32504
Elsewhere: RCSB PDB 6NEO · PDBe 6NEO · UniProt O32504

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